Table 6 Barley metabolic pathways that involve genes with differential expression between Bowman and i:BwAlm lines
From: Identification of nuclear genes controlling chlorophyll synthesis in barley by RNA-seq
Pathway | Gene IDs | Protein product names | Log2(FC) | p-value |
|---|---|---|---|---|
Calvin-Benson-Bassham cycle | MLOC_58999 | Phosphoribulokinase | −3,89 | 0.0001 |
MLOC_44795 | Ribulose bisphosphate carboxylase small chain | −4,67 | 0.002 | |
MLOC_34272 | Uncharacterized protein | −2,50 | 5e-05 | |
MLOC_61558 | Ribulose bisphosphate carboxylase large chain | −3,35 | 0.014 | |
MLOC_64679 | Ribulose bisphosphate carboxylase small chain | −3,86 | 0.007 | |
MLOC_76055 | Phosphoglycerate kinase | −2,08 | 0.002 | |
MLOC_44511 | Predicted protein | −4,35 | 0.002 | |
MLOC_62317 | high cyclic electron flow 1 | −3,31 | 0.002 | |
MLOC_19670 | Uncharacterized protein | −2,17 | 0.002 | |
MLOC_21811 | Ribulose bisphosphate carboxylase small chain | −3,72 | 0.0005 | |
Photosynthesis light reactions | MLOC_77860 | Predicted protein | −1,87 | 0.02 |
MLOC_24730 | Uncharacterized protein | −4,95 | 0.002 | |
MLOC_64318 | Predicted protein | −2,42 | 0.006 | |
MLOC_69460 | photosystem I subunit O | −5,97 | 0.002 | |
MLOC_70480 | Uncharacterized protein | −4,29 | 0.01 | |
MLOC_70835 | Cytochrome b6-f complex iron-sulfur subunit | −2,64 | 0.002 | |
MLOC_71570 | Uncharacterized protein | −4,74 | 0.002 | |
Rubisco shunt | MLOC_34272 | Uncharacterized protein | −3.51 | 0.002 |
MLOC_44795 | Ribulose bisphosphate carboxylase small chain | −5.04 | 0.002 | |
MLOC_58999 | Phosphoribulokinase | −4.02 | 0.0001 | |
MLOC_61558 | Ribulose bisphosphate carboxylase large chain | −4.47 | 0.014 | |
MLOC_64679 | Ribulose bisphosphate carboxylase small chain | −4.27 | 0.007 | |
MLOC_21811 | Ribulose bisphosphate carboxylase small chain | −3,72 | 0.0005 | |
Adenosine ribonucleotides de novo biosynthesis | MLOC_15467 | Adenylosuccinate synthetase | −2,82 | 0.002 |
MLOC_24862 | Uncharacterized protein | −2,39 | ||
MLOC_40997 | Uncharacterized protein | −2,53 | 0.02 | |
MLOC_58581 | ATPase F1 complex gamma subunit protein | −2,29 | 0.002 | |
MLOC_74679 | ATP synthase delta-subunit gene | −3,14 | 0.002 | |
MLOC_75851 | Uncharacterized protein | −1.57 | 0.007 | |
Chlorophyllide a biosynthesis I (aerobic, light-dependent) | MLOC_44116 | Predicted protein | −2.94 | 0.02 |
MLOC_81101 | Predicted protein | −2.17 | 0.002 | |
MLOC_11877 | Uncharacterized | −2.55 | 0.002 | |
MLOC_80913 | Uncharacterized | −3.41 | 0.002 | |
MLOC_5142 | Predicted protein | −1.57 | 0.002 | |
MLOC_49468 | Magnesium-protoporphyrin IX monomethyl ester | −4.14 | 0.002 |